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ltdD murein L,D-transpeptidase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939216, updated on 26-Jun-2025
Gene symbol
ltdD
Gene description
murein L,D-transpeptidase
Locus tag
BSU_14040
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU14040
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Sequence:
NC_000964.3 (1476518..1477012, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene regulator of transcription factor ComK function via modulation of mRNA stability Neighboring gene putative transporter Neighboring gene exported metallophosphoesterase (Mn2+ and Zn2+) Neighboring gene putative 2,4-dienoyl-CoA reductase

Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. B. subtilis ykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes. Bielnicki J, et al. Proteins, 2006 Jan 1. PMID 16287140, Free PMC Article
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The ykuD protein is a representative of a distinctly prokaryotic and ubiquitous family found among both pathogenic and nonpathogenic Gram-positive and Gram-negative bacteria.
    Title: B. subtilis ykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes.
Submit: New GeneRIF Correction

Homology

Preferred Names
murein L,D-transpeptidase
NP_389287.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 11011148, 16287140, 23832002; Product type cp: cell process

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    1476518..1477012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389287.1 murein L,D-transpeptidase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389287.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAP1E0E6
    Conserved Domains (2) summary
    smart00257
    Location:3 → 45
    LysM; Lysin motif
    cd16913
    Location:57 → 162
    YkuD_like; L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34816.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases