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ypgR putative lyase or scaffold [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939082, updated on 6-Oct-2023

Summary

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Gene symbol
ypgR
Gene description
putative lyase or scaffold
Locus tag
BSU_21880
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU21880
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Genomic context

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Sequence:
NC_000964.3 (2302727..2303860, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase; bacilliredoxin A (de-bacillithiolation) Neighboring gene dihydroxy-acid dehydratase Neighboring gene Mn(2+)-dependent (deoxy)ribonucleoside pyrophosphohydrolase Neighboring gene bacillithiol peroxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative lyase or scaffold
NP_390071.1
  • Evidence 3: Putative function from multiple computational evidences; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    2302727..2303860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_390071.1 putative lyase or scaffold [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_390071.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1JFT7
    Conserved Domains (4) summary
    smart00932
    Location:5 → 90
    Nfu_N; Scaffold protein Nfu/NifU N terminal
    COG1413
    Location:233 → 375
    HEAT; HEAT repeat [General function prediction only]
    sd00044
    Location:236 → 262
    HEAT; HEAT repeat [structural motif]
    pfam13769
    Location:109 → 188
    Virulence_fact; Virulence factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P54169.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials