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kdgR transcriptional repressor of the Kdg operon (KdgR-galacturonate) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939063, updated on 4-Feb-2024

Summary

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Gene symbol
kdgR
Gene description
transcriptional repressor of the Kdg operon (KdgR-galacturonate)
Locus tag
BSU_22120
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU22120
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Genomic context

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Sequence:
NC_000964.3 (2324613..2325632, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene 2-keto-3-deoxygluconate-6-phosphate aldolase Neighboring gene 2-keto-3-deoxygluconate kinase Neighboring gene 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, 5-keto-4-deoxyuronate isomerase Neighboring gene 2-keto-3-deoxygluconate oxidoreductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of the kduID operon of Bacillus subtilis by the KdgR repressor and the ccpA gene: identification of two KdgR-binding sites within the kdgR-kduI intergenic region. Lin JS, et al. Microbiology (Reading), 2007 Mar. PMID 17322190
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. In this study, Northern analysis was carried out to demonstrate that the kdgR gene also negatively regulates the kduID operon, encoding ketodeoxyuronate isomerase and ketodeoxygluconate reductase
    Title: Regulation of the kduID operon of Bacillus subtilis by the KdgR repressor and the ccpA gene: identification of two KdgR-binding sites within the kdgR-kduI intergenic region.
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General gene information

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Homology

General protein information

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Preferred Names
transcriptional repressor of the Kdg operon (KdgR-galacturonate)
NP_390094.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 9846747, 15223311, 17322190, 28040177; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    2324613..2325632 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_390094.1 transcriptional repressor of the Kdg operon (KdgR-galacturonate) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_390094.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1L6E9
    Conserved Domains (2) summary
    smart00354
    Location:9 → 79
    HTH_LACI; helix_turn _helix lactose operon repressor
    cd06283
    Location:69 → 336
    PBP1_RegR_EndR_KdgR-like; ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P50844.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases