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rhgH rhamnogalacturonan hydrolase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938759, updated on 6-Oct-2023
Gene symbol
rhgH
Gene description
rhamnogalacturonan hydrolase
Locus tag
BSU_07000
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU07000
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Sequence:
NC_000964.3 (764781..765815)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene pectin degradation byproducts (rhamnose oligosaccharides)-binding lipoprotein Neighboring gene rhamnogalacturonan permease Neighboring gene rhamnogalacturonan permease Neighboring gene transcriptional regulator (AraC/XylS family) Neighboring gene rhamnogalacturonan acetylesterase Neighboring gene putative enzyme

Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide. Itoh T, et al. J Mol Biol, 2006 Jul 14. PMID 16781735
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Based on their gene arrangements in genome and enzyme properties, YteR and YesR were found to constitute a novel enzyme activity, "unsaturated rhamnogalacturonyl hydrolase," classified as new glycoside hydrolase family 105.
    Title: A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide.
Submit: New GeneRIF Correction

Homology

Preferred Names
rhamnogalacturonan hydrolase
NP_388581.1
  • Evidence 1b: Function from experimental evidences in the studied species; PubMedId: 16781735, 17449691; Product type e: enzyme

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388581.1 rhamnogalacturonan hydrolase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388581.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KW93
    Conserved Domains (1) summary
    COG4225
    Location:1 → 343
    YesR; Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O31521.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials