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yefB putative site-specific recombinase / invertase; HGT island [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938745, updated on 6-Aug-2024

Summary

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Gene symbol
yefB
Gene description
putative site-specific recombinase / invertase; HGT island
Locus tag
BSU_06740
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU06740
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Genomic context

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Sequence:
NC_000964.3 (738995..739897, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase Neighboring gene methyltransferase of m5U747 and m5U1939 in 23S RNA Neighboring gene putative resolvase; HGT island Neighboring gene putative restriction type II methylase; HGT island Neighboring gene putative DNA helicase / endonuclease; HGT island

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative site-specific recombinase / invertase; HGT island
NP_388556.1
  • Evidence 3: Putative function from multiple computational evidences; PubMedId: 1779754, 1762151; Product type h: extrachromosomal origin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    738995..739897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388556.1 putative site-specific recombinase / invertase; HGT island [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388556.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M4JR91, A0AAE2SI30
    Conserved Domains (2) summary
    pfam07508
    Location:1 → 89
    Recombinase
    pfam14287
    Location:265 → 292
    DUF4368; Domain of unknown function (DUF4368)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34574.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases