U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

oxdC oxalate decarboxylase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938620, updated on 4-Oct-2024
Gene symbol
oxdC
Gene description
oxalate decarboxylase
Locus tag
BSU_33240
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU33240
Try the new Gene page
Try the new Transcripts and proteins table
Sequence:
NC_000964.3 (3410466..3411623)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene alternative sigma factor Neighboring gene factor involved in oxalate decarboxylase expression Neighboring gene acid stress-sensitive anti sigma factor Neighboring gene putative ABC transporter (ATP-binding protein) Neighboring gene putative ABC transporter (ATP-binding protein)

Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Bidentate Substrate Binding Mode in Oxalate Decarboxylase. Montoya A, et al. Molecules, 2024 Sep 17. PMID 39339409, Free PMC Article
  2. Enhanced resistance to rice blast and sheath blight in rice (oryza sativa L.) by expressing the oxalate decarboxylase protein Bacisubin from Bacillus subtilis. Qi Z, et al. Plant Sci, 2017 Dec. PMID 29223342
  3. The identity of the active site of oxalate decarboxylase and the importance of the stability of active-site lid conformations. Just VJ, et al. Biochem J, 2007 Nov 1. PMID 17680775, Free PMC Article
  4. SAD at home: solving the structure of oxalate decarboxylase with the anomalous signal from manganese using X-ray data collected on a home source. Stevenson CE, et al. Acta Crystallogr D Biol Crystallogr, 2004 Dec. PMID 15583401
  5. Redox Cycling, pH Dependence, and Ligand Effects of Mn(III) in Oxalate Decarboxylase from Bacillus subtilis. Twahir UT, et al. Biochemistry, 2016 Nov 29. PMID 27797181

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Bidentate Substrate Binding Mode in Oxalate Decarboxylase.
    Title: Bidentate Substrate Binding Mode in Oxalate Decarboxylase.
  2. Collectively, this study advances the understanding of OxDC in resistance to rice disease and its possible mechanisms. The results also suggest that OxDC would be an effective antifungal protein preventing fungal infection in transgenic rice.
    Title: Enhanced resistance to rice blast and sheath blight in rice (oryza sativa L.) by expressing the oxalate decarboxylase protein Bacisubin from Bacillus subtilis.
  3. The pH dependence of the Mn(III) electron paramagnetic resonance (EPR) signal compares very well with that of enzymatic activity, providing evidence that the catalytic reaction of oxalate decarboxylase is driven by Mn(III), which is generated in the presence of dioxygen.
    Title: Redox Cycling, pH Dependence, and Ligand Effects of Mn(III) in Oxalate Decarboxylase from Bacillus subtilis.
  4. The flexibility and stability of oxdC active-site lid conformations are important in catalysis. The kinetics of four site- directed mutants are consistent with only site 1 being catalytically active.
    Title: The identity of the active site of oxalate decarboxylase and the importance of the stability of active-site lid conformations.
  5. the reaction specificity of a catalytically active Mn center in OxDC can be perturbed by relatively small changes in local protein environment, in agreement with a proposal based on prior computational studies
    Title: Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis.
  6. X-ray diffraction structure of oxalate decarboxylase
    Title: SAD at home: solving the structure of oxalate decarboxylase with the anomalous signal from manganese using X-ray data collected on a home source.
Submit: New GeneRIF Correction

Homology

Preferred Names
oxalate decarboxylase
NP_391204.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 10960116, 14697267, 14871895, 17459326, 18573182, 19047353, 21255608, 21264418, 21782782, 26744902, 27797181; Product type e : enzyme

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391204.1 oxalate decarboxylase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391204.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KBF4
    Conserved Domains (1) summary
    TIGR03404
    Location:13 → 379
    bicupin_oxalic; bicupin, oxalate decarboxylase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34714.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases