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alkA DNA-3-methyladenine glycosylase; prophage 1 region [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938586, updated on 12-Feb-2021

Summary

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Gene symbol
alkA
Gene description
DNA-3-methyladenine glycosylase; prophage 1 region
Locus tag
BSU_01800
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU01800
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Genomic context

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Sequence:
NC_000964.3 (202547..203458, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene L-glutamine-D-fructose-6-phosphate amidotransferase Neighboring gene hypothetical protein Neighboring gene methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) Neighboring gene O6-methylguanine-DNA methyltransferase; prophage 1 region Neighboring gene putative NADH dehydrogenase; prophage 1 region

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
DNA-3-methyladenine glycosylase; prophage 1 region
NP_388061.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 7565865, 8376346, 16468998; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    202547..203458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388061.1 DNA-3-methyladenine glycosylase; prophage 1 region [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388061.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    COG0122
    Location:18 → 302
    AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P37878.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials