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ybdK two-component system sensor histidine kinase [YbdJ] [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938496, updated on 12-Feb-2021

Summary

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Gene symbol
ybdK
Gene description
two-component system sensor histidine kinase [YbdJ]
Locus tag
BSU_02010
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU02010
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Genomic context

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Sequence:
NC_000964.3 (221950..222912)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative hydrolase/transferase Neighboring gene two-component system response regulator [YbdK] Neighboring gene hypothetical protein Neighboring gene putative protein kinase Neighboring gene putative phage protein; prophage region 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural characterization of the intra-membrane histidine kinase YbdK from Bacillus subtilis in DPC micelles. Kim YP, et al. Biochem Biophys Res Commun, 2010 Jan 15. PMID 20035725
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. these findings provide the first biochemical data on the transmembrane domain of YbdK.
    Title: Structural characterization of the intra-membrane histidine kinase YbdK from Bacillus subtilis in DPC micelles.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
two-component system sensor histidine kinase [YbdJ]
NP_388083.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 11717295, 20035725; Product type rc: receptor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388083.1 two-component system sensor histidine kinase [YbdJ] [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388083.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    COG0642
    Location:29 → 318
    BaeS; Signal transduction histidine kinase [Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O31433.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases