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kdgD 5-dehydro-4-deoxyglucarate dehydratase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938409, updated on 4-Feb-2024

Summary

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Gene symbol
kdgD
Gene description
5-dehydro-4-deoxyglucarate dehydratase
Locus tag
BSU_02460
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU02460
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Genomic context

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Sequence:
NC_000964.3 (267890..268816)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene two-component sensor histidine kinase [GlnL] for glutamine degradation Neighboring gene two-component response regulator [GlnJ] for glutamine utilisation Neighboring gene 2,5-dioxovalerate dehydrogenase (alpha-ketoglutaric semialdehyde dehydrogenase) Neighboring gene glucarate transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
5-dehydro-4-deoxyglucarate dehydratase
NP_388128.2
  • Evidence 2a: Function from experimental evidences in other organisms; PubMedId: 12044674; Product type e : enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388128.2 5-dehydro-4-deoxyglucarate dehydratase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388128.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4G4P0
    Conserved Domains (1) summary
    cl21457
    Location:5 → 297
    TIM; TIM-like beta/alpha barrel domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42235.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials