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ycbK putative tryptophan or indole exporter [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938405, updated on 6-Jun-2024

Summary

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Gene symbol
ycbK
Gene description
putative tryptophan or indole exporter
Locus tag
BSU_02540
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU02540
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Genomic context

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Sequence:
NC_000964.3 (277342..278280)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene anti-TRAP regulator Neighboring gene two-component response regulator [YcbM] Neighboring gene two-component sensor histidine kinase [YcbL]

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative tryptophan or indole exporter
NP_388136.1
  • Evidence 3: Putative function from multiple computational evidences; PubMedId: 10706627, 15063849, 15849754, 16850406, 16879415, 17114263; Product type t : transporter

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388136.1 putative tryptophan or indole exporter [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388136.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1IP16
    Conserved Domains (2) summary
    COG0697
    Location:8 → 305
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:162 → 298
    EamA; EamA-like transporter family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42243.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases