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ycdA lipoprotein involved in swarming behaviour [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938380, updated on 6-Oct-2023

Summary

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Gene symbol
ycdA
Gene description
lipoprotein involved in swarming behaviour
Locus tag
BSU_02780
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU02780
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Genomic context

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Sequence:
NC_000964.3 (299438..300502, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene Na+ ABC efflux transporter (permease) Neighboring gene putative ion channel associated aldo-keto reductase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
lipoprotein involved in swarming behaviour
NP_388160.1
  • Evidence 1b: Function from experimental evidences in the studied species; PubMedId: 22496484; Product type lp: lipoprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    299438..300502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388160.1 lipoprotein involved in swarming behaviour [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388160.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4G4S9
    Conserved Domains (2) summary
    pfam11611
    Location:43 → 149
    DUF4352; Domain of unknown function (DUF4352)
    pfam17118
    Location:164 → 352
    DUF5105; Domain of unknown function (DUF5105)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34538.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases