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ydeE putative transcriptional regulator (AraC/XylS family) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938117, updated on 6-Oct-2023

Summary

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Gene symbol
ydeE
Gene description
putative transcriptional regulator (AraC/XylS family)
Locus tag
BSU_05170
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU05170
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Genomic context

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Sequence:
NC_000964.3 (563614..564486, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative transcriptional regulator (AraC/XylS family) Neighboring gene putative permease Neighboring gene putative PLP-dependent transcriptional regulator Neighboring gene putative permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative transcriptional regulator (AraC/XylS family)
NP_388398.1
  • Evidence 3: Putative function from multiple computational evidences; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    563614..564486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388398.1 putative transcriptional regulator (AraC/XylS family) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388398.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KP57
    Conserved Domains (2) summary
    COG2207
    Location:7 → 104
    AraC; AraC-type DNA-binding domain and AraC-containing proteins [Transcription]
    COG3708
    Location:128 → 290
    YdeE; Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P96662.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases