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deoR transcriptional regulator of pyrmidine deoxyribonucleosides degradation (DeoR-dR5P) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 937543, updated on 4-Feb-2024

Summary

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Gene symbol
deoR
Gene description
transcriptional regulator of pyrmidine deoxyribonucleosides degradation (DeoR-dR5P)
Locus tag
BSU_39430
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU39430
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Genomic context

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Sequence:
NC_000964.3 (4052379..4053320, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene pyrimidine-nucleoside Na+(H+) cotransporter Neighboring gene deoxyribose-phosphate aldolase Neighboring gene putative integral membrane protein Neighboring gene putative ethanolamine permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis. Škerlová J, et al. FEBS J, 2014 Sep. PMID 24863636
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Bacillus subtilis subsp. subtilis str. 168 DeoR protein is homologous to the sorbitol operon regulator family of metabolic regulators.
    Title: Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
transcriptional regulator of pyrmidine deoxyribonucleosides degradation (DeoR-dR5P)
NP_391822.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 8550462, 10074062, 10714997, 24863636; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    4052379..4053320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391822.1 transcriptional regulator of pyrmidine deoxyribonucleosides degradation (DeoR-dR5P) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391822.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AA34VPG5
    Conserved Domains (1) summary
    COG2390
    Location:1 → 313
    DeoR; DNA-binding transcriptional regulator LsrR, DeoR family [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P39140.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases