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rmgQ unsaturated rhamnogalacturonyl hydrolase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 937273, updated on 4-Apr-2024

Summary

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Gene symbol
rmgQ
Gene description
unsaturated rhamnogalacturonyl hydrolase
Locus tag
BSU_30120
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU30120
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Genomic context

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Sequence:
NC_000964.3 (3081131..3082252, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative membrane enzyme for rhamnogalaturonan degradation Neighboring gene putative dehydrogenase of rhamnogalaturonan degradation Neighboring gene lipoprotein required for rhamnogalaturonan transport and degradation Neighboring gene permease for unsaturated rhamnogalacturonan Neighboring gene membrane bound transcriptional regulator (controlling rhamnogalacturonan degradation)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate. Itoh T, et al. Biochem Biophys Res Commun, 2006 Sep 8. PMID 16870154
  2. 1.6 A crystal structure of YteR protein from Bacillus subtilis, a predicted lyase. Zhang R, et al. Proteins, 2005 Aug 15. PMID 15906318, Free PMC Article
  3. A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide. Itoh T, et al. J Mol Biol, 2006 Jul 14. PMID 16781735
  4. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  5. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Based on their gene arrangements in genome and enzyme properties, YteR and YesR were found to constitute a novel enzyme activity, "unsaturated rhamnogalacturonyl hydrolase," classified as new glycoside hydrolase family 105.
    Title: A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide.
  2. crystal structure of YteR protein from Bacillus subtilis
    Title: 1.6 A crystal structure of YteR protein from Bacillus subtilis, a predicted lyase.
  3. structure of D143N in complex with unsaturated rhamnogalacturonan disaccharide (substrate) determined at 1.9A resolution by X-ray crystallography.
    Title: Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
unsaturated rhamnogalacturonyl hydrolase
NP_390890.3
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 15148314, 15906318, 16781735, 16870154, 17449691, 23504016; Product type e : enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    3081131..3082252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_390890.3 unsaturated rhamnogalacturonyl hydrolase [Bacillus subtilis subsp. subtilis str. 168]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KXG6
    Conserved Domains (1) summary
    COG4225
    Location:6 → 368
    YesR; Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34559.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases