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dapF diaminopimelate epimerase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 937110, updated on 6-Jun-2024

Summary

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Gene symbol
dapF
Gene description
diaminopimelate epimerase
Locus tag
BSU_32170
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU32170
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Genomic context

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Sequence:
NC_000964.3 (3306040..3306894, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene polyamine N-acetyltransferase Neighboring gene sulfur carrier chaperone involved in Fe-S cluster assembly Neighboring gene putative Na+(H+)/nucleoside cotransporter Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
diaminopimelate epimerase
NP_391097.1
  • Evidence 1c: Function from experimental evidences in the studied genus; PubMedId: 14627808, 16723397, 19307721, 28873470; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    3306040..3306894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391097.1 diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391097.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4G0X5
    Conserved Domains (1) summary
    PRK00450
    Location:3 → 284
    dapF; diaminopimelate epimerase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O32114.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases