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pgdS gamma-DD-glutamyl hydrolase (PGA depolymerase) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936837, updated on 17-Dec-2024
Gene symbol
pgdS
Gene description
gamma-DD-glutamyl hydrolase (PGA depolymerase)
Locus tag
BSU_35860
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU35860
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Sequence:
NC_000964.3 (3696257..3697498, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene teichoic acid-peptidoglycan tethering enzyme (LCP component) with transcription regulator domain of capsule synthesis Neighboring gene 5-amino-6-ribitylamino-2,4(1H, 3H)-pyrimidinedione 5'-phosphate phosphatase (promiscuous activity) Neighboring gene factor required extrachromosomal elements maintenance Neighboring gene capsular polyglutamate synthetase (acid resistance)

Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Solution scattering study of the Bacillus subtilis PgdS enzyme involved in poly-γ-glutamic acids degradation. Zeng J, et al. PLoS One, 2018. PMID 29608608, Free PMC Article
  2. Knockout of pgdS and ggt genes improves γ-PGA yield in B. subtilis. Scoffone V, et al. Biotechnol Bioeng, 2013 Jul. PMID 23335395
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Preferred Names
gamma-DD-glutamyl hydrolase (PGA depolymerase)
NP_391467.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 12073126, 12644511, 16689787, 16952838, 26158264, 28664519; Product type e : enzyme

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    3696257..3697498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391467.1 gamma-DD-glutamyl hydrolase (PGA depolymerase) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391467.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAP1E4N5
    Conserved Domains (2) summary
    COG0791
    Location:296 → 408
    Spr; Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]
    pfam00877
    Location:178 → 285
    NLPC_P60; NlpC/P60 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P96740.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials