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spoVD transpeptidase penicillin-binding protein [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936661, updated on 6-Jun-2024

Summary

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Gene symbol
spoVD
Gene description
transpeptidase penicillin-binding protein
Locus tag
BSU_15170
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU15170
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Genomic context

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Sequence:
NC_000964.3 (1584214..1586154)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene 16S rRNA m4C1402 methyltransferase Neighboring gene cell-division protein Neighboring gene penicillin-binding protein 2B Neighboring gene UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase Neighboring gene phospho-N-acetylmuramoyl-pentapeptide undecaprenyl phosphate (C55P) transferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Forespore Targeting of SpoVD in Bacillus subtilis Is Mediated by the N-Terminal Part of the Protein. Sidarta M, et al. J Bacteriol, 2018 Jul 1. PMID 29661861, Free PMC Article
  2. The PASTA domain of penicillin-binding protein SpoVD is dispensable for endospore cortex peptidoglycan assembly in Bacillus subtilis. Bukowska-Faniband E, et al. Microbiology (Reading), 2015 Feb. PMID 25481876
  3. Interactions between late-acting proteins required for peptidoglycan synthesis during sporulation. Fay A, et al. J Mol Biol, 2010 Jun 18. PMID 20417640, Free PMC Article
  4. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  5. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The N-terminal part of SpoVD, containing the single transmembrane region, determines the forespore targeting of the protein.
    Title: Forespore Targeting of SpoVD in Bacillus subtilis Is Mediated by the N-Terminal Part of the Protein.
  2. PASTA domain in SpoVD is not essential for cortex synthesis and not important for targeting SpoVD to the forespore outer membrane during sporulation.
    Title: The PASTA domain of penicillin-binding protein SpoVD is dispensable for endospore cortex peptidoglycan assembly in Bacillus subtilis.
  3. interactions between SpoVE, a nonessential, sporulation-specific homolog of the well-conserved and essential SEDS (shape elongation, division, and sporulation) proteins, and SpoVD, a nonessential class B penicillin binding protein
    Title: Interactions between late-acting proteins required for peptidoglycan synthesis during sporulation.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
transpeptidase penicillin-binding protein
NP_389400.2
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 8244929, 8289242, 9006059, 28383125; Product type cp: cell process

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389400.2 transpeptidase penicillin-binding protein [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389400.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4FWB2
    Conserved Domains (2) summary
    TIGR02214
    Location:11 → 638
    spoVD_pbp; stage V sporulation protein D
    sd00037
    Location:526 → 576
    PASTA; PASTA domain [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q03524.3

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases