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xpf phage PBSX; putative RNA polymerase PBSX sigma factor-like [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936474, updated on 4-Feb-2024

Summary

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Gene symbol
xpf
Gene description
phage PBSX; putative RNA polymerase PBSX sigma factor-like
Locus tag
BSU_12560
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU12560
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Genomic context

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Sequence:
NC_000964.3 (1324471..1324980)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene phage PBSX; putative DNA binding protein Neighboring gene phage PBSX; conserved hypothetical protein Neighboring gene phage PBSX; conserved hypothetical protein Neighboring gene phage PBSX; conserved protein of unknown function Neighboring gene phage PBSX; prophage terminase (small subunit) Neighboring gene phage PBSX; prophage terminase (large subunit) Neighboring gene phage PBSX; phage capsid portal protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
phage PBSX; putative RNA polymerase PBSX sigma factor-like
NP_389138.1
  • Evidence 3: Putative function from multiple computational evidences; PubMedId: 8083174, 25176138; Product type h: extrachromosomal origin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389138.1 phage PBSX; putative RNA polymerase PBSX sigma factor-like [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389138.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4FVG9
    Conserved Domains (1) summary
    PRK06930
    Location:1 → 169
    PRK06930; positive control sigma-like factor; Validated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P39784.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases