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cspB major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936224, updated on 6-Oct-2023
Gene symbol
cspB
Gene description
major cold-shock protein, RNA helicase co-factor, RNA co-chaperone
Locus tag
BSU_09100
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU09100
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Sequence:
NC_000964.3 (984262..984465, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter ATP-binding protein Neighboring gene putative ABC transporter (ATP-binding protein) Neighboring gene putative ABC transporter (permease) Neighboring gene putative ABC transporter (binding lipoprotein) Neighboring gene diguanylate cyclase

Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution. Sachs R, et al. RNA, 2012 Jan. PMID 22128343, Free PMC Article
  2. T-rich DNA single strands bind to a preformed site on the bacterial cold shock protein Bs-CspB. Max KE, et al. J Mol Biol, 2006 Jul 14. PMID 16780871
  3. Optimized variants of the cold shock protein from in vitro selection: structural basis of their high thermostability. Max KE, et al. J Mol Biol, 2007 Jun 15. PMID 17481655
  4. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  5. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. two crystal structures of cold shock protein B from Bacillus subtilis (Bs-CspB) in complex with either a hexanucleotide (5'-UUUUUU-3') or heptanucleotide (5'-GUCUUUA-3') single-stranded RNA (ssRNA) was presented.
    Title: RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution.
  2. This study reveals the stoichiometry and sequence determinants of the binding of single-stranded nucleic acids to a preformed site on Bacillus subtilis-CspB.
    Title: T-rich DNA single strands bind to a preformed site on the bacterial cold shock protein Bs-CspB.
  3. Data describe optimized variants of the cold shock protein CspB from in vitro selection, and address the structural basis of their high thermostability.
    Title: Optimized variants of the cold shock protein from in vitro selection: structural basis of their high thermostability.
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Homology

Preferred Names
major cold-shock protein, RNA helicase co-factor, RNA co-chaperone
NP_388791.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 12493834, 16352840, 22128343, 25851716; Product type f: factor

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    984262..984465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388791.1 major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388791.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A165G3L6
    Conserved Domains (1) summary
    COG1278
    Location:1 → 65
    CspC; Cold shock protein, CspA family [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P32081.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases