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pelA pectate lyase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936113, updated on 6-Oct-2023

Summary

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Gene symbol
pelA
Gene description
pectate lyase
Locus tag
BSU_07560
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU07560
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Genomic context

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Sequence:
NC_000964.3 (827993..829255)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene heat stress induced protein Neighboring gene malate (2-oxoglutarate) transporter Neighboring gene two-component sensor histidine kinase Neighboring gene two-component response regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. QM/MM studies on the calcium-assisted β-elimination mechanism of pectate lyase from bacillus subtilis. Ma G, et al. Proteins, 2016 Nov. PMID 27447541
  2. The alkaline pectate lyase PEL168 of Bacillus subtilis heterologously expressed in Pichia pastoris is more stable and efficient for degumming ramie fiber. Zhang C, et al. BMC Biotechnol, 2013 Mar 19. PMID 23510095, Free PMC Article
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Molecular dynamics studies on the calcium-assisted beta-elimination mechanism of pectate lyase have been described.
    Title: QM/MM studies on the calcium-assisted β-elimination mechanism of pectate lyase from bacillus subtilis.
  2. PEL168P had a specific activity of 1320 U/mg with a Km of 0.09 mg/ml and a Vmax of 18.13 mumol/min.
    Title: The alkaline pectate lyase PEL168 of Bacillus subtilis heterologously expressed in Pichia pastoris is more stable and efficient for degumming ramie fiber.
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General gene information

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Homology

General protein information

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Preferred Names
pectate lyase
NP_388637.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 8262178, 12823818, 27447541; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388637.1 pectate lyase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388637.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    H2DGK5
    Conserved Domains (1) summary
    COG3866
    Location:1 → 420
    PelB; Pectate lyase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P39116.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials