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speA arginine decarboxylase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936002, updated on 6-Jun-2024

Summary

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Gene symbol
speA
Gene description
arginine decarboxylase
Locus tag
BSU_14630
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU14630
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Genomic context

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Sequence:
NC_000964.3 (1534279..1535751, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene small peptidoglycan-associated lipoprotein Neighboring gene miscRNA Neighboring gene regulator of GapA synthesis Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution and multiplicity of arginine decarboxylases in polyamine biosynthesis and essential role in Bacillus subtilis biofilm formation. Burrell M, et al. J Biol Chem, 2010 Dec 10. PMID 20876533, Free PMC Article
  2. Preliminary X-ray crystallographic studies of Bacillus subtilis SpeA protein. Liu XY, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2009 Mar 1. PMID 19255484, Free PMC Article
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. arginine decarboxylases have a role in polyamine biosynthesis and in Bacillus subtilis biofilm formation
    Title: Evolution and multiplicity of arginine decarboxylases in polyamine biosynthesis and essential role in Bacillus subtilis biofilm formation.
  2. The speA gene was amplified from B. subtilis genomic DNA, cloned and expresed in E coli and the protein was crstallized and diffracted to 2.0 A resolution.
    Title: Preliminary X-ray crystallographic studies of Bacillus subtilis SpeA protein.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
arginine decarboxylase
NP_389346.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 9723923, 19114526, 19255484, 20876533; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    1534279..1535751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389346.1 arginine decarboxylase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389346.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4FW53
    Conserved Domains (1) summary
    COG1982
    Location:3 → 490
    LdcC; Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P21885.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials