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EGFEM1P EGF like and EMI domain containing 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 93556, updated on 23-Nov-2021

Summary

Official Symbol
EGFEM1Pprovided by HGNC
Official Full Name
EGF like and EMI domain containing 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:25149
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C3orf50; NCRNA00259
Expression
Low expression observed in reference dataset See more
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Genomic context

See EGFEM1P in Genome Data Viewer
Location:
3q26.2
Exon count:
16
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (168249522..168830599)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (167967310..168548387)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr3.4789 Neighboring gene Sharpr-MPRA regulatory region 6960 Neighboring gene Sharpr-MPRA regulatory region 1003 Neighboring gene RNA, U2 small nuclear 20, pseudogene Neighboring gene microRNA 551b Neighboring gene uncharacterized LOC105374200 Neighboring gene ribosomal protein SA pseudogene 33 Neighboring gene ribosomal protein L21 pseudogene 43 Neighboring gene long intergenic non-protein coding RNA 2082

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • multiple EGF-like-domains 6 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_021485.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092954, BC011266, BI461452, BM716713, DN831821, DR000794, DT932647, DT932648

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    168249522..168830599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_025765.1: Suppressed sequence

    Description
    NG_025765.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
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