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TEX30 testis expressed 30 [ Homo sapiens (human) ]

Gene ID: 93081, updated on 11-Jun-2021

Summary

Official Symbol
TEX30provided by HGNC
Official Full Name
testis expressed 30provided by HGNC
Primary source
HGNC:HGNC:25188
See related
Ensembl:ENSG00000151287
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf27
Expression
Biased expression in testis (RPKM 28.8), liver (RPKM 4.4) and 7 other tissues See more
Orthologs
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Genomic context

See TEX30 in Genome Data Viewer
Location:
13q33.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (102765888..102773792, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (103418238..103426136, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene tripeptidyl peptidase 2 Neighboring gene methyltransferase 21C, AARS1 lysine Neighboring gene coiled-coil domain containing 168 Neighboring gene uncharacterized LOC105370337 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene BIVM-ERCC5 readthrough Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene RNY5 pseudogene 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
testis-expressed protein 30
Names
testis-expressed sequence 30 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286775.2NP_001273704.1  testis-expressed protein 30 isoform 2

    See identical proteins and their annotated locations for NP_001273704.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    BC015148, BG527702, HY045638, HY229390
    Consensus CDS
    CCDS66578.1
    UniProtKB/Swiss-Prot
    Q5JUR7
    Related
    ENSP00000365197.3, ENST00000376029.3
  2. NM_001286776.2NP_001273705.1  testis-expressed protein 30 isoform 3

    See identical proteins and their annotated locations for NP_001273705.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    BC015148, BI559423, HY229390
    Consensus CDS
    CCDS66577.1
    UniProtKB/Swiss-Prot
    Q5JUR7
    UniProtKB/TrEMBL
    A0A0C4DFW4
    Related
    ENSP00000365189.4, ENST00000376021.8
    Conserved Domains (1) summary
    cl21494
    Location:57178
    Abhydrolase; alpha/beta hydrolases
  3. NM_138779.5NP_620134.3  testis-expressed protein 30 isoform 1

    See identical proteins and their annotated locations for NP_620134.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    BC015148, HY229390
    Consensus CDS
    CCDS9503.2
    UniProtKB/Swiss-Prot
    Q5JUR7
    UniProtKB/TrEMBL
    A0A024RDZ1
    Related
    ENSP00000365200.4, ENST00000376032.9
    Conserved Domains (1) summary
    cl21494
    Location:32219
    Abhydrolase; alpha/beta hydrolases

RNA

  1. NR_104590.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal exons, compared to variant 1. This variant is represented as non-coding because the predicted ORF does not meet RefSeq quality criteria.
    Source sequence(s)
    BI861260, HY045638, HY229390

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    102765888..102773792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024449439.1XP_024305207.1  testis-expressed protein 30 isoform X1

    Conserved Domains (1) summary
    cl21494
    Location:32219
    Abhydrolase; alpha/beta hydrolases
  2. XM_005254097.3XP_005254154.1  testis-expressed protein 30 isoform X1

    See identical proteins and their annotated locations for XP_005254154.1

    UniProtKB/Swiss-Prot
    Q5JUR7
    UniProtKB/TrEMBL
    A0A024RDZ1
    Conserved Domains (1) summary
    cl21494
    Location:32219
    Abhydrolase; alpha/beta hydrolases
  3. XM_017020852.2XP_016876341.1  testis-expressed protein 30 isoform X1

    UniProtKB/Swiss-Prot
    Q5JUR7
    UniProtKB/TrEMBL
    A0A024RDZ1
    Conserved Domains (1) summary
    cl21494
    Location:32219
    Abhydrolase; alpha/beta hydrolases
  4. XM_011521136.2XP_011519438.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:54175
    Abhydrolase; alpha/beta hydrolases
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