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LOC9306166 calcineurin B-like protein 1 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9306166, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9306166
Gene description
calcineurin B-like protein 1
Locus tag
ARALYDRAFT_914947
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (11379930..11382695, complement)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene decapping nuclease DXO homolog, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At4g17616 Neighboring gene uncharacterized LOC9306167 Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcineurin B-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    11379930..11382695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021019651.1 → XP_020875310.1  calcineurin B-like protein 1

    UniProtKB/TrEMBL
    D7M9H5
    Conserved Domains (1) summary
    COG5126
    Location:25 → 183
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  2. XM_021019650.1 → XP_020875309.1  calcineurin B-like protein 1

    UniProtKB/TrEMBL
    D7M9H5
    Conserved Domains (1) summary
    COG5126
    Location:25 → 183
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  3. XM_002870049.2 → XP_002870095.1  calcineurin B-like protein 1

    See identical proteins and their annotated locations for XP_002870095.1

    UniProtKB/TrEMBL
    D7M9H5
    Conserved Domains (1) summary
    COG5126
    Location:25 → 183
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
Nucleotide Protein
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