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ZBTB47 zinc finger and BTB domain containing 47 [ Homo sapiens (human) ]

Gene ID: 92999, updated on 11-Jun-2021

Summary

Official Symbol
ZBTB47provided by HGNC
Official Full Name
zinc finger and BTB domain containing 47provided by HGNC
Primary source
HGNC:HGNC:26955
See related
Ensembl:ENSG00000114853
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF651
Expression
Broad expression in heart (RPKM 22.4), brain (RPKM 14.9) and 22 other tissues See more
Orthologs
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Genomic context

See ZBTB47 in Genome Data Viewer
Location:
3p22.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (42653697..42667580)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (42695189..42709072)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene SEC22 homolog C, vesicle trafficking protein Neighboring gene SS18 like 2 Neighboring gene natural killer cell triggering receptor Neighboring gene ZBTB47 and NKTR antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 3469 Neighboring gene Sharpr-MPRA regulatory region 14812 Neighboring gene RNA, 7SL, cytoplasmic 567, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1190, DKFZp434N0615

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger and BTB domain-containing protein 47
Names
zinc finger protein 651

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145166.4NP_660149.2  zinc finger and BTB domain-containing protein 47

    See identical proteins and their annotated locations for NP_660149.2

    Status: VALIDATED

    Source sequence(s)
    AB033016, AC006059, AK127065, BF509106
    Consensus CDS
    CCDS46805.2
    UniProtKB/Swiss-Prot
    Q9UFB7
    Related
    ENSP00000232974.6, ENST00000232974.11
    Conserved Domains (6) summary
    smart00225
    Location:18113
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:630701
    COG5048; FOG: Zn-finger [General function prediction only]
    TIGR04104
    Location:577621
    cxxc_20_cxxc; cxxc_20_cxxc protein
    sd00017
    Location:578598
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:4110
    BTB; BTB/POZ domain
    pfam13465
    Location:646669
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    42653697..42667580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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