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LOC9299069 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9299069, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9299069
Gene description
9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic
Locus tag
ARALYDRAFT_920825
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
NCED9
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302507.1 (43340..45652, complement)

NW_003302507.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase SRK2C Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO1 Neighboring gene uncharacterized LOC110226628

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302507 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic
Names
nine-cis-epoxycarotenoid dioxygenase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302507.1 Reference v.1.0 Primary Assembly

    Range
    43340..45652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002862948.2 → XP_002862994.1  9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic

    See identical proteins and their annotated locations for XP_002862994.1

    UniProtKB/TrEMBL
    D7MW32
    Conserved Domains (1) summary
    PLN02258
    Location:13 → 604
    PLN02258; 9-cis-epoxycarotenoid dioxygenase NCED
Nucleotide Protein
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