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CCDC102A coiled-coil domain containing 102A [ Homo sapiens (human) ]

Gene ID: 92922, updated on 5-Aug-2022

Summary

Official Symbol
CCDC102Aprovided by HGNC
Official Full Name
coiled-coil domain containing 102Aprovided by HGNC
Primary source
HGNC:HGNC:28097
See related
Ensembl:ENSG00000135736 AllianceGenome:HGNC:28097
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be part of myosin complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in prostate (RPKM 2.8), endometrium (RPKM 2.6) and 25 other tissues See more
Orthologs
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Genomic context

See CCDC102A in Genome Data Viewer
Location:
16q21
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (57512181..57537016, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (63307389..63331765, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (57546093..57570483, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 83 Neighboring gene RNA polymerase II subunit C Neighboring gene docking protein 4 Neighboring gene adhesion G protein-coupled receptor G5 Neighboring gene uncharacterized LOC105371291 Neighboring gene uncharacterized LOC107984889 Neighboring gene high mobility group box 3 pseudogene 32

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC10992, MGC13119

Gene Ontology Provided by GOA

Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 102A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033212.4NP_149989.2  coiled-coil domain-containing protein 102A

    See identical proteins and their annotated locations for NP_149989.2

    Status: VALIDATED

    Source sequence(s)
    AC004382, BC009941, CA449463
    Consensus CDS
    CCDS10784.1
    UniProtKB/Swiss-Prot
    Q96A19, Q9BT74
    Related
    ENSP00000258214.2, ENST00000258214.3
    Conserved Domains (1) summary
    pfam16046
    Location:382465
    FAM76; FAM76 protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    57512181..57537016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011523469.3XP_011521771.1  coiled-coil domain-containing protein 102A isoform X1

    See identical proteins and their annotated locations for XP_011521771.1

    UniProtKB/Swiss-Prot
    Q96A19, Q9BT74
    Conserved Domains (1) summary
    pfam16046
    Location:382465
    FAM76; FAM76 protein

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    63307389..63331765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)