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LOC9272017 deoxyribodipyrimidine photo-lyase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9272017, updated on 3-Dec-2024
Gene symbol
LOC9272017
Gene description
deoxyribodipyrimidine photo-lyase-like
Locus tag
OSNPB_100167600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
phr; OsPHR; OsCPDII; photolyase
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Try the new Transcripts and proteins table
See LOC9272017 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (4802538..4806506, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (4663077..4667160, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene enolase-like Neighboring gene nucleolar protein 12 Neighboring gene uncharacterized LOC4348179 Neighboring gene uncharacterized LOC136351050

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A gene for a Class II DNA photolyase from Oryza sativa: cloning of the cDNA by dilution-amplification. Hirouchi T, et al. Mol Genet Genomics, 2003 Jul. PMID 12764611
  2. Biochemical and biological properties of DNA photolyases derived from utraviolet-sensitive rice cultivars. Yamamoto A, et al. Genes Genet Syst, 2007 Aug. PMID 17895582
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribodipyrimidine photo-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photoreactive repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
deoxyribodipyrimidine photo-lyase
Names
CPD-photolyase
DNA photolyase
LOC_Os10g08580
OSJNAb0015J03.12
Photoreactivating enzyme
NP_001391844.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404915.1 → NP_001391844.1  deoxyribodipyrimidine photo-lyase

    Status: VALIDATED

    Source sequence(s)
    AB210109, AK111418, CI470020
    UniProtKB/Swiss-Prot
    A0A0P0XT34, C7J833, Q3LGA3, Q6F6A2, Q84LN6, Q8LM09
    UniProtKB/TrEMBL
    A9ZLY4, A9ZLY6, Q4LEM6

RNA

  1. NR_175890.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK111418, CA999324, CI470020

  2. NR_175891.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK111418, CI470020

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    4802538..4806506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001540836.3 RNA Sequence

  2. XR_001540835.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6F6A2.1 GenPept UniProtKB/Swiss-Prot:Q6F6A2

Gene LinkOut

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Research Materials