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LOC9270894 serine decarboxylase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9270894, updated on 3-Dec-2024
Gene symbol
LOC9270894
Gene description
serine decarboxylase 2-like
Locus tag
OSNPB_100105700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_30471
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See LOC9270894 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (432548..435792)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (427271..430669)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene DNA (cytosine-5)-methyltransferase CMT3-like Neighboring gene uncharacterized LOC4347955 Neighboring gene acyl transferase 1-like Neighboring gene spermidine hydroxycinnamoyltransferase 2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carboxy-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
serine decarboxylase 2
Names
LOC_Os10g01640
OSJNBa0065H03.2
OSJNBa0071K19.20
NP_001411454.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424525.1 → NP_001411454.1  serine decarboxylase 2

    Status: VALIDATED

    Source sequence(s)
    AK243112
    UniProtKB/Swiss-Prot
    C7J7L5, Q7XHE6, Q8RV06
    UniProtKB/TrEMBL
    A2Z4D2

RNA

  1. NR_188769.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK243112

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    432548..435792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RV06.1 GenPept UniProtKB/Swiss-Prot:Q8RV06

Gene LinkOut

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Molecular Biology Databases
Research Materials