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TMEM183A transmembrane protein 183A [ Homo sapiens (human) ]

Gene ID: 92703, updated on 7-Jun-2020

Summary

Official Symbol
TMEM183Aprovided by HGNC
Official Full Name
transmembrane protein 183Aprovided by HGNC
Primary source
HGNC:HGNC:20173
See related
Ensembl:ENSG00000163444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf37
Expression
Ubiquitous expression in bone marrow (RPKM 33.8), testis (RPKM 23.6) and 25 other tissues See more
Orthologs

Genomic context

See TMEM183A in Genome Data Viewer
Location:
1q32.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (203007367..203024848)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (202976520..202993976)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MGAT4 family member F, pseudogene Neighboring gene CRISPRi-validated cis-regulatory element chr1.10803 Neighboring gene ribosomal protein S20 pseudogene 8 Neighboring gene PTPRF interacting protein alpha 4 Neighboring gene uncharacterized LOC105371687 Neighboring gene myogenin promoter associated myogenic regulatory antisense long non coding RNA Neighboring gene myogenin

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053085.1 RefSeqGene

    Range
    5008..22482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001322955.1NP_001309884.1  transmembrane protein 183A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) encodes isoform 2.
    Source sequence(s)
    AC096632
  2. NM_001322956.1NP_001309885.1  transmembrane protein 183A isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) encodes isoform 3.
    Source sequence(s)
    AC096632
  3. NM_001322957.1NP_001309886.1  transmembrane protein 183A isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) encodes isoform 4.
    Source sequence(s)
    AC096632
  4. NM_001322958.1NP_001309887.1  transmembrane protein 183A isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) encodes isoform 5.
    Source sequence(s)
    AC096632
  5. NM_001322959.1NP_001309888.1  transmembrane protein 183A isoform 6

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) encodes isoform 6.
    Source sequence(s)
    AC096632
  6. NM_001349859.1NP_001336788.1  transmembrane protein 183A isoform 7

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12) encodes isoform 7.
    Source sequence(s)
    AC096632
  7. NM_001349862.1NP_001336791.1  transmembrane protein 183A isoform 8

    Status: VALIDATED

    Description
    Transcript Variant: This variant (13) encodes isoform 8.
    Source sequence(s)
    AC096632
  8. NM_138391.6NP_612400.3  transmembrane protein 183A isoform 1

    See identical proteins and their annotated locations for NP_612400.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC096632, AK291426, DC364887
    Consensus CDS
    CCDS1432.1
    UniProtKB/Swiss-Prot
    Q8IXX5
    Related
    ENSP00000356211.3, ENST00000367242.4

RNA

  1. NR_136530.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  2. NR_136531.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  3. NR_136532.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  4. NR_136533.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  5. NR_136534.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  6. NR_146285.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  7. NR_146286.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  8. NR_146287.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  9. NR_146288.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632
  10. NR_146289.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096632

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    203007367..203024848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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