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LOC9269659 probable glycosyltransferase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9269659, updated on 17-Jul-2024
Gene symbol
LOC9269659
Gene description
probable glycosyltransferase 5
Locus tag
OSNPB_030306100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GT5; OsGT5; OsJ_10556
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See LOC9269659 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10917972..10919691)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10864330..10866340)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene peptide chain release factor PrfB2, chloroplastic Neighboring gene probable glycosyltransferase 4 Neighboring gene uncharacterized LOC9268022 Neighboring gene lon protease homolog, mitochondrial

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable glycosyltransferase 5
Names
LOC_Os03g19330

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    10917972..10919691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775163.3 → XP_015630649.1  probable glycosyltransferase 5

    UniProtKB/Swiss-Prot
    A0A0P0VXC2, A2XFT6, C7J0P3, Q10MK0
    Conserved Domains (1) summary
    PLN03182
    Location:89 → 443
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C7J0P3.1 GenPept UniProtKB/Swiss-Prot:C7J0P3

Gene LinkOut

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Molecular Biology Databases
Research Materials