U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9268765 ABC transporter B family member 11 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268765, updated on 17-Jul-2024
Gene symbol
LOC9268765
Gene description
ABC transporter B family member 11
Locus tag
OSNPB_010534700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
mdr5; OJ1029_F04.26
Try the new Gene page
Try the new Transcripts and proteins table
See LOC9268765 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (19947798..19955502)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (19379686..19387450)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ABC transporter B family member 11 Neighboring gene uncharacterized LOC112939323 Neighboring gene uncharacterized LOC4326411 Neighboring gene uncharacterized LOC136356090 Neighboring gene calcium permeable stress-gated cation channel 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ABC transporter B family member 11
Names
MDR-like ABC transporter
Os01g0534700
putative CjMDR1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    19947798..19955502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026258.2 → XP_025882043.1  ABC transporter B family member 11 isoform X1

    UniProtKB/TrEMBL
    Q8GU71
    Conserved Domains (1) summary
    PTZ00265
    Location:4 → 1178
    PTZ00265; multidrug resistance protein (mdr1); Provisional

  2. XM_015786358.3 → XP_015641844.1  ABC transporter B family member 11 isoform X3

    UniProtKB/TrEMBL
    Q8GU71
    Conserved Domains (4) summary
    cd03249
    Location:283 → 521
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    COG1132
    Location:3 → 523
    MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
    pfam00664
    Location:1 → 234
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:888 → 1090
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_015786211.3 → XP_015641697.1  ABC transporter B family member 11 isoform X2

    UniProtKB/TrEMBL
    Q8GU71
    Conserved Domains (3) summary
    cd03249
    Location:278 → 516
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    PTZ00265
    Location:1 → 1173
    PTZ00265; multidrug resistance protein (mdr1); Provisional
    pfam00664
    Location:3 → 229
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials