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LOC9268311 delta(14)-sterol reductase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268311, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9268311
Gene description
delta(14)-sterol reductase
Locus tag
OSNPB_090565600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 9.9), roots before flowering (RPKM 9.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22536570..22540740)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At3g49055 Neighboring gene nuclear pore complex protein GP210 Neighboring gene arogenate dehydratase/prephenate dehydratase 6, chloroplastic Neighboring gene uncharacterized LOC4347876

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables delta14-sterol reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta(14)-sterol reductase
Names
OSJNBa0070E11.9
Os09g0565600
putative C-14 sterol reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22536570..22540740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026020548.1 → XP_025876333.1  delta(14)-sterol reductase isoform X2

    UniProtKB/TrEMBL
    B8BEM0
    Conserved Domains (1) summary
    cl21511
    Location:10 → 317
    PEMT; Phospholipid methyltransferase

  2. XM_015755127.2 → XP_015610613.1  delta(14)-sterol reductase isoform X1

    UniProtKB/TrEMBL
    A0A8J8YLC0, B7F9K3, B8BEM0, B9G552
    Conserved Domains (1) summary
    cl21511
    Location:10 → 369
    PEMT; Phospholipid methyltransferase
Nucleotide Protein
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