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LOC9268125 uncharacterized LOC9268125 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268125, updated on 17-Jul-2024
Gene symbol
LOC9268125
Gene description
uncharacterized LOC9268125
Locus tag
OSNPB_080268550
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (10314907..10326112)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (10257626..10268933)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107282018 Neighboring gene uncharacterized LOC107281918 Neighboring gene myosin-binding protein 3 Neighboring gene uncharacterized LOC4345133

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC9268125
Names
DNA-directed RNA polymerase III subunit RPC5
Os08g0268550
Os08g0268900

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    10314907..10326112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795024.3 → XP_015650510.1  uncharacterized protein LOC9268125

    UniProtKB/TrEMBL
    A2YT86
    Conserved Domains (1) summary
    pfam04801
    Location:116 → 483
    Sin_N; Sin-like protein conserved region

  2. XM_026027543.2 → XP_025883328.1  uncharacterized protein LOC9268125

    UniProtKB/TrEMBL
    A2YT86
    Conserved Domains (1) summary
    pfam04801
    Location:116 → 483
    Sin_N; Sin-like protein conserved region
Nucleotide Protein
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