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LOC9267107 uncharacterized LOC9267107 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9267107, updated on 12-Jul-2024
Gene symbol
LOC9267107
Gene description
uncharacterized LOC9267107
Locus tag
OSNPB_050279300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (11690409..11699090, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (11647724..11656591, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356626 Neighboring gene acyl transferase 5-like Neighboring gene E3 ubiquitin-protein ligase hel2 Neighboring gene uncharacterized LOC4338286

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC9267107
Names
Os05g0279300
tRNA pseudouridine synthase A 1

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    11690409..11699090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025841.2 → XP_025881626.1  uncharacterized protein LOC9267107 isoform X3

    Conserved Domains (1) summary
    cl00130
    Location:4 → 175
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)

  2. XM_026025840.2 → XP_025881625.1  uncharacterized protein LOC9267107 isoform X2

    UniProtKB/TrEMBL
    B7EV41
    Conserved Domains (1) summary
    cd02570
    Location:4 → 193
    PseudoU_synth_EcTruA; Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA

  3. XM_015782266.3 → XP_015637752.1  uncharacterized protein LOC9267107 isoform X1

    Conserved Domains (1) summary
    cd02570
    Location:65 → 312
    PseudoU_synth_EcTruA; Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA
Nucleotide Protein
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