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LOC9266563 RHOMBOID-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9266563, updated on 17-Jul-2024
Gene symbol
LOC9266563
Gene description
RHOMBOID-like protein 1
Locus tag
OSNPB_010147300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0434B04.3
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See LOC9266563 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2574458..2577900)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2566483..2570025)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276625 Neighboring gene protein IWS1 homolog 1 Neighboring gene factor of DNA methylation 2 Neighboring gene centromere-binding protein 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
RHOMBOID-like protein 1
Names
Os01g0147300
P0416D03.39
putative membrane protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    2574458..2577900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765921.3 → XP_015621407.1  RHOMBOID-like protein 1

    UniProtKB/TrEMBL
    B8AD89
    Conserved Domains (1) summary
    pfam01694
    Location:160 → 296
    Rhomboid; Rhomboid family
Nucleotide Protein
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