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NOG noggin [ Homo sapiens (human) ]

Gene ID: 9241, updated on 1-Jun-2020

Summary

Official Symbol
NOGprovided by HGNC
Official Full Name
nogginprovided by HGNC
Primary source
HGNC:HGNC:7866
See related
Ensembl:ENSG00000183691 MIM:602991
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SYM1; SYNS1; SYNS1A
Summary
The secreted polypeptide, encoded by this gene, binds and inactivates members of the transforming growth factor-beta (TGF-beta) superfamily signaling proteins, such as bone morphogenetic protein-4 (BMP4). By diffusing through extracellular matrices more efficiently than members of the TGF-beta superfamily, this protein may have a principal role in creating morphogenic gradients. The protein appears to have pleiotropic effect, both early in development as well as in later stages. It was originally isolated from Xenopus based on its ability to restore normal dorsal-ventral body axis in embryos that had been artificially ventralized by UV treatment. The results of the mouse knockout of the ortholog suggest that it is involved in numerous developmental processes, such as neural tube fusion and joint formation. Recently, several dominant human NOG mutations in unrelated families with proximal symphalangism (SYM1) and multiple synostoses syndrome (SYNS1) were identified; both SYM1 and SYNS1 have multiple joint fusion as their principal feature, and map to the same region (17q22) as this gene. All of these mutations altered evolutionarily conserved amino acid residues. The amino acid sequence of this human gene is highly homologous to that of Xenopus, rat and mouse. [provided by RefSeq, Jul 2008]
Orthologs

Genomic context

See NOG in Genome Data Viewer
Location:
17q22
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (56593699..56595611)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (54671060..54672951)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268194 Neighboring gene ribosomal protein L39 pseudogene 33 Neighboring gene chromosome 17 open reading frame 67 Neighboring gene diacylglycerol kinase epsilon

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Brachydactyly type B2
MedGen: C1969652 OMIM: 611377 GeneReviews: Not available
Compare labs
Stapes ankylosis with broad thumb and toes
MedGen: C1866656 OMIM: 184460 GeneReviews: Not available
Compare labs
Symphalangism, proximal, 1A
MedGen: C3714899 OMIM: 185800 GeneReviews: Not available
Compare labs
Symphalangism-brachydactyly syndrome
MedGen: C0342282 OMIM: 186500 GeneReviews: Not available
Compare labs
Tarsal-carpal coalition syndrome
MedGen: C1861305 OMIM: 186570 GeneReviews: Not available
Compare labs

NHGRI GWAS Catalog

Description
A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.
NHGRI GWA Catalog
Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
NHGRI GWA Catalog
Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.
NHGRI GWA Catalog
Hundreds of variants clustered in genomic loci and biological pathways affect human height.
NHGRI GWA Catalog
Many sequence variants affecting diversity of adult human height.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cytokine binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
BMP signaling pathway TAS
Traceable Author Statement
more info
 
BMP signaling pathway involved in heart development ISS
Inferred from Sequence or Structural Similarity
more info
 
atrial cardiac muscle tissue morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
axial mesoderm development IEA
Inferred from Electronic Annotation
more info
 
cartilage development IEA
Inferred from Electronic Annotation
more info
 
cell differentiation in hindbrain IMP
Inferred from Mutant Phenotype
more info
PubMed 
dorsal/ventral pattern formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
dorsal/ventral pattern formation IDA
Inferred from Direct Assay
more info
PubMed 
embryonic digit morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic skeletal joint morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic skeletal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
endocardial cushion morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
endoderm formation IEA
Inferred from Electronic Annotation
more info
 
epithelial to mesenchymal transition ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
face morphogenesis IEA
Inferred from Electronic Annotation
more info
 
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart trabecula morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
in utero embryonic development IEA
Inferred from Electronic Annotation
more info
 
limb development IMP
Inferred from Mutant Phenotype
more info
PubMed 
lung morphogenesis IEA
Inferred from Electronic Annotation
more info
 
membranous septum morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
mesoderm formation IEA
Inferred from Electronic Annotation
more info
 
middle ear morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
motor neuron axon guidance IEA
Inferred from Electronic Annotation
more info
 
negative regulation of BMP signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of BMP signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of BMP signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 
negative regulation of astrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
negative regulation of canonical Wnt signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of cardiac muscle cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
negative regulation of cartilage development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of cell migration IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of cytokine activity IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of epithelial to mesenchymal transition involved in endocardial cushion formation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of osteoblast differentiation IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of pathway-restricted SMAD protein phosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of pathway-restricted SMAD protein phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
nervous system development TAS
Traceable Author Statement
more info
PubMed 
neural plate morphogenesis IEA
Inferred from Electronic Annotation
more info
 
neural tube closure IEA
Inferred from Electronic Annotation
more info
 
notochord morphogenesis IEA
Inferred from Electronic Annotation
more info
 
osteoblast differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
osteoblast differentiation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
outflow tract morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
pharyngeal arch artery morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
pituitary gland development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of branching involved in ureteric bud morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of epithelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of gene expression ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of glomerulus development ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
prostatic bud formation IEA
Inferred from Electronic Annotation
more info
 
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
skeletal system development TAS
Traceable Author Statement
more info
PubMed 
somatic stem cell population maintenance IMP
Inferred from Mutant Phenotype
more info
PubMed 
somite development IEA
Inferred from Electronic Annotation
more info
 
spinal cord development IEA
Inferred from Electronic Annotation
more info
 
ureteric bud formation IEA
Inferred from Electronic Annotation
more info
 
ventricular compact myocardium morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
ventricular septum morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
wound healing ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
extracellular region TAS
Traceable Author Statement
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
noggin
Names
symphalangism 1 (proximal)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011958.1 RefSeqGene

    Range
    5001..6900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_005450.6NP_005441.1  noggin precursor

    See identical proteins and their annotated locations for NP_005441.1

    Status: REVIEWED

    Source sequence(s)
    AC015724
    Consensus CDS
    CCDS11589.1
    UniProtKB/Swiss-Prot
    Q13253
    Related
    ENSP00000328181.4, ENST00000332822.6
    Conserved Domains (1) summary
    pfam05806
    Location:12232
    Noggin; Noggin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    56593699..56595611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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