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RBM18 RNA binding motif protein 18 [ Homo sapiens (human) ]

Gene ID: 92400, updated on 8-Oct-2017
Official Symbol
RBM18provided by HGNC
Official Full Name
RNA binding motif protein 18provided by HGNC
Primary source
HGNC:HGNC:28413
See related
Ensembl:ENSG00000119446 Vega:OTTHUMG00000020602
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
9q33.2
Exon count:
8
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 9 NC_000009.12 (122239555..122264864, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (125001834..125027143, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A8 Neighboring gene MORN repeat containing 5 Neighboring gene LIM homeobox 6 Neighboring gene mitochondrial ribosome recycling factor Neighboring gene prostaglandin-endoperoxide synthase 1 Neighboring gene olfactory receptor family 1 subfamily J member 2 Neighboring gene olfactory receptor family 1 subfamily J member 1

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC2734

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
probable RNA-binding protein 18

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033117.3NP_149108.1  probable RNA-binding protein 18

    See identical proteins and their annotated locations for NP_149108.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript and encodes the functional protein.
    Source sequence(s)
    AL162424, AL389986, BC008942, BP870502, CA314508, DA308339
    Consensus CDS
    CCDS6839.1
    UniProtKB/Swiss-Prot
    Q96H35
    Related
    ENSP00000409315.2, OTTHUMP00000022049, ENST00000417201.3, OTTHUMT00000053928
    Conserved Domains (2) summary
    cd12355
    Location:26105
    RRM_RBM18; RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins
    cl25617
    Location:26189
    LSM_int_assoc; LSM-interacting associated unstructured

RNA

  1. NR_027125.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK310008, AL162424, AL389986, BP870502, CA314508, DA308339
  2. NR_027126.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK310807, AL162424, AL389986, BP870502, CA314508, DA308339

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p7 Primary Assembly

    Range
    122239555..122264864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006717319.1XP_006717382.1  probable RNA-binding protein 18 isoform X1

    See identical proteins and their annotated locations for XP_006717382.1

    UniProtKB/Swiss-Prot
    Q96H35
    Conserved Domains (2) summary
    cd12355
    Location:26105
    RRM_RBM18; RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins
    cl25617
    Location:26189
    LSM_int_assoc; LSM-interacting associated unstructured

Alternate CHM1_1.1

Genomic

  1. NC_018920.2 Alternate CHM1_1.1

    Range
    125149891..125175212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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