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C11orf52 chromosome 11 open reading frame 52 [ Homo sapiens (human) ]

Gene ID: 91894, updated on 13-Mar-2020

Summary

Official Symbol
C11orf52provided by HGNC
Official Full Name
chromosome 11 open reading frame 52provided by HGNC
Primary source
HGNC:HGNC:30531
See related
Ensembl:ENSG00000149300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in kidney (RPKM 18.9), thyroid (RPKM 11.7) and 16 other tissues See more
Orthologs

Genomic context

See C11orf52 in Genome Data Viewer
Location:
11q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (111918913..111926871)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (111789601..111797595)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37a pseudogene 8 Neighboring gene HSPB2-C11orf52 readthrough (NMD candidate) Neighboring gene Sharpr-MPRA regulatory region 8432 Neighboring gene crystallin alpha B Neighboring gene heat shock protein family B (small) member 2 Neighboring gene RNA, 5S ribosomal pseudogene 351 Neighboring gene DIX domain containing 1 Neighboring gene peptidylprolyl isomerase H pseudogene 1 Neighboring gene dihydrolipoamide S-acetyltransferase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Readthrough HSPB2-C11orf52

Readthrough gene: HSPB2-C11orf52, Included gene: HSPB2

Homology

Clone Names

  • FLJ25219, MGC14839, MGC131888

General protein information

Preferred Names
uncharacterized protein C11orf52

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080659.3NP_542390.2  uncharacterized protein C11orf52

    See identical proteins and their annotated locations for NP_542390.2

    Status: VALIDATED

    Source sequence(s)
    BC008501, BQ102454
    Consensus CDS
    CCDS8353.1
    UniProtKB/Swiss-Prot
    Q96A22
    Related
    ENSP00000278601.5, ENST00000278601.6
    Conserved Domains (1) summary
    pfam15147
    Location:1123
    DUF4578; Domain of unknown function (DUF4578)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    111918913..111926871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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