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ZNF845 zinc finger protein 845 [ Homo sapiens (human) ]

Gene ID: 91664, updated on 10-Oct-2019

Summary

Official Symbol
ZNF845provided by HGNC
Official Full Name
zinc finger protein 845provided by HGNC
Primary source
HGNC:HGNC:25112
See related
Ensembl:ENSG00000213799
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in lymph node (RPKM 2.2), thyroid (RPKM 2.2) and 25 other tissues See more
Orthologs

Genomic context

See ZNF845 in Genome Data Viewer
Location:
19q13.42
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (53333719..53356906)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (53837002..53858122)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987270 Neighboring gene family with sequence similarity 90 member A28, pseudogene Neighboring gene vomeronasal 1 receptor 6 pseudogene Neighboring gene putative zinc finger protein 137 Neighboring gene zinc finger protein 525 Neighboring gene ZNF765-ZNF761 readthrough Neighboring gene ribosomal protein L39 pseudogene 35 Neighboring gene zinc finger protein 765 Neighboring gene ribosomal protein L39 pseudogene 36

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321522.1NP_001308451.1  zinc finger protein 845

    Status: VALIDATED

    Source sequence(s)
    AC010467
    Consensus CDS
    CCDS46170.1
    UniProtKB/Swiss-Prot
    Q96IR2
    Conserved Domains (5) summary
    smart00349
    Location:848
    KRAB; krueppel associated box
    COG5048
    Location:381813
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:693713
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:847
    KRAB; KRAB box
    pfam13465
    Location:649674
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001321523.1NP_001308452.1  zinc finger protein 845

    Status: VALIDATED

    Source sequence(s)
    AC010467
    Consensus CDS
    CCDS46170.1
    UniProtKB/Swiss-Prot
    Q96IR2
    Conserved Domains (5) summary
    smart00349
    Location:848
    KRAB; krueppel associated box
    COG5048
    Location:381813
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:693713
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:847
    KRAB; KRAB box
    pfam13465
    Location:649674
    zf-H2C2_2; Zinc-finger double domain
  3. NM_001321524.1NP_001308453.1  zinc finger protein 845

    Status: VALIDATED

    Source sequence(s)
    AC010467
    Consensus CDS
    CCDS46170.1
    UniProtKB/Swiss-Prot
    Q96IR2
    Related
    ENSP00000470005.1, ENST00000595091.6
    Conserved Domains (5) summary
    smart00349
    Location:848
    KRAB; krueppel associated box
    COG5048
    Location:381813
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:693713
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:847
    KRAB; KRAB box
    pfam13465
    Location:649674
    zf-H2C2_2; Zinc-finger double domain
  4. NM_138374.3NP_612383.1  zinc finger protein 845

    See identical proteins and their annotated locations for NP_612383.1

    Status: VALIDATED

    Source sequence(s)
    AC010467, DC400704
    Consensus CDS
    CCDS46170.1
    UniProtKB/Swiss-Prot
    Q96IR2
    Related
    ENSP00000388311.1, ENST00000458035.3
    Conserved Domains (5) summary
    smart00349
    Location:848
    KRAB; krueppel associated box
    COG5048
    Location:381813
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:693713
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:847
    KRAB; KRAB box
    pfam13465
    Location:649674
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    53333719..53356906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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