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ICR1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164906, updated on 7-Sep-2023

Summary

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Gene symbol
ICR1
Primary source
SGD:S000132612
Locus tag
YNCI0012
See related
AllianceGenome:SGD:S000132612
Gene type
ncRNA
RNA name
other
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: IX
Exon count:
1
Sequence:
Chromosome: IX; NC_001141.2 (393884..397082, complement)

Chromosome IX - NC_001141.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Flo11p Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Mrs1p Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001141.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Flor Yeast Diversity and Dynamics in Biologically Aged Wines. David-Vaizant V, et al. Front Microbiol, 2018. PMID 30319565, Free PMC Article
  2. The Histone Acetyltransferase Gcn5 Regulates ncRNA-ICR1 and FLO11 Expression during Pseudohyphal Development in Saccharomyces cerevisiae. Wang LC, et al. Biomed Res Int, 2015. PMID 25922832, Free PMC Article
  3. Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Bumgarner SL, et al. Mol Cell, 2012 Feb 24. PMID 22264825, Free PMC Article
  4. Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Bumgarner SL, et al. Proc Natl Acad Sci U S A, 2009 Oct 27. PMID 19805129, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Gcn5 plays an important role in the regulatory network of FLO11 expression via Gcn4 by downregulating ICR1 expression, which derepresses FLO11 for promoting pseudohyphal development
    Title: The Histone Acetyltransferase Gcn5 Regulates ncRNA-ICR1 and FLO11 Expression during Pseudohyphal Development in Saccharomyces cerevisiae.
Submit: New GeneRIF Correction

General gene information

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  • Long intergenic regulatory ncRNA; has a key role in regulating transcription of the nearby protein-coding ORF FLO11; initiated far upstream from FLO11 and transcribed across much of the large promoter of FLO11, repressing FLO11 transcription in cis

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001141.2 Reference assembly

    Range
    393884..397082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132191.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Molecular Biology Databases