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RSAD2 radical S-adenosyl methionine domain containing 2 [ Homo sapiens (human) ]

Gene ID: 91543, updated on 9-Feb-2020

Summary

Official Symbol
RSAD2provided by HGNC
Official Full Name
radical S-adenosyl methionine domain containing 2provided by HGNC
Primary source
HGNC:HGNC:30908
See related
Ensembl:ENSG00000134321 MIM:607810
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
cig5; vig1; cig33; 2510004L01Rik
Expression
Ubiquitous expression in spleen (RPKM 6.0), lung (RPKM 5.3) and 24 other tissues See more
Orthologs

Genomic context

See RSAD2 in Genome Data Viewer
Location:
2p25.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (6865733..6898239)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (7017796..7038370)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373404 Neighboring gene negative regulator of interferon response Neighboring gene cytidine/uridine monophosphate kinase 2 Neighboring gene RNF144A antisense RNA 1 Neighboring gene ring finger protein 144A Neighboring gene Sharpr-MPRA regulatory region 7427/13434

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
NHGRI GWA Catalog

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of viperin by siRNA leads to enhance HIV-1 replication in HIV-1 infected monocyte-derived macrophages PubMed

Protein interactions

Protein Gene Interaction Pubs
Vif vif HIV-1 Vif downregulates the expression of radical S-adenosyl methionine domain containing 2 (RSAD2) in Vif-expression T cells PubMed
Vpr vpr HIV-1 Vpr upregulates the gene expression of RSAD2 in human monocyte-derived macrophages PubMed
Vpu vpu The expression of radical S-adenosyl methionine domain containing 2 is enhanced in Vpu-deficient HIV-1-infected cells as compared to that in wild-type-infected cells PubMed
capsid gag Infection of monocyte-derived macrophages with HIV-1 redistributes viperin from ER into foci, which significantly co-localizes with p24 and CD81 PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
4 iron, 4 sulfur cluster binding IDA
Inferred from Direct Assay
more info
PubMed 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein self-association IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
CD4-positive, alpha-beta T cell activation ISS
Inferred from Sequence or Structural Similarity
more info
 
CD4-positive, alpha-beta T cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
defense response to virus IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of protein secretion IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of viral genome replication IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of T-helper 2 cell cytokine production ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of toll-like receptor 7 signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of toll-like receptor 9 signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
response to virus IDA
Inferred from Direct Assay
more info
PubMed 
type I interferon signaling pathway TAS
Traceable Author Statement
more info
 
viral process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum membrane TAS
Traceable Author Statement
more info
 
fibrillar center IDA
Inferred from Direct Assay
more info
 
lipid droplet ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial outer membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
radical S-adenosyl methionine domain-containing protein 2
Names
cytomegalovirus-induced gene 5 protein
viperin
virus inhibitory protein, endoplasmic reticulum-associated, interferon-inducible

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080657.5NP_542388.2  radical S-adenosyl methionine domain-containing protein 2

    See identical proteins and their annotated locations for NP_542388.2

    Status: VALIDATED

    Source sequence(s)
    AC017076, AF442151, BC017969
    Consensus CDS
    CCDS1656.1
    UniProtKB/Swiss-Prot
    Q8WXG1
    Related
    ENSP00000371471.3, ENST00000382040.4
    Conserved Domains (2) summary
    cd01335
    Location:78262
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    TIGR04278
    Location:13361
    viperin; antiviral radical SAM protein viperin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    6865733..6898239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011510415.2XP_011508717.1  radical S-adenosyl methionine domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    cd01335
    Location:48194
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
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