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ybbN thioredoxin [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 915346, updated on 4-Apr-2024

Summary

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Gene symbol
ybbN
Gene description
thioredoxin
Locus tag
ECs_0555
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (611223..612077, complement)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene membrane protein Neighboring gene protease Neighboring gene iron export ABC transporter ATPase Neighboring gene iron export ABC transporter permease Neighboring gene oxidoreductase Neighboring gene acyl-CoA thioesterase I Neighboring gene ABC transporter ATPase Neighboring gene ABC transporter permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
thioredoxin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    611223..612077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308582.2 thioredoxin [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_308582.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A826TS07
    Conserved Domains (2) summary
    COG3118
    Location:1 → 284
    YbbN; Negative regulator of GroEL, contains thioredoxin-like and TPR-like domains [Posttranslational modification, protein turnover, chaperones]
    sd00008
    Location:114 → 143
    TPR_YbbN; TPR repeat [structural motif]
Nucleotide Protein
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