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SYNGR2 synaptogyrin 2 [ Homo sapiens (human) ]

Gene ID: 9144, updated on 7-Jun-2020

Summary

Official Symbol
SYNGR2provided by HGNC
Official Full Name
synaptogyrin 2provided by HGNC
Primary source
HGNC:HGNC:11499
See related
Ensembl:ENSG00000108639 MIM:603926
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene encodes an integral membrane protein containing four transmembrane regions and a C-terminal cytoplasmic tail that is tyrosine phosphorylated. The exact function of this protein is unclear, but studies of a similar rat protein suggest that it may play a role in regulating membrane traffic in non-neuronal cells. The gene belongs to the synaptogyrin gene family. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]
Expression
Ubiquitous expression in prostate (RPKM 65.0), lung (RPKM 62.5) and 25 other tissues See more
Orthologs

Genomic context

See SYNGR2 in Genome Data Viewer
Location:
17q25.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (78168545..78172964)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (76164632..76169009)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene transmembrane channel like 6 Neighboring gene transmembrane channel like 8 Neighboring gene chromosome 17 open reading frame 99 Neighboring gene eukaryotic translation initiation factor 5A pseudogene 2 Neighboring gene uncharacterized LOC107985050 Neighboring gene thymidine kinase 1 Neighboring gene arylformamidase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102914

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulated exocytosis ISS
Inferred from Sequence or Structural Similarity
more info
 
synaptic vesicle membrane organization ISS
Inferred from Sequence or Structural Similarity
more info
 
viral process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular exosome HDA PubMed 
integral component of membrane NAS
Non-traceable Author Statement
more info
PubMed 
lipid droplet IEA
Inferred from Electronic Annotation
more info
 
neuromuscular junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptic vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptic vesicle membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
synaptogyrin-2
Names
cellugyrin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320523.2NP_001307452.1  synaptogyrin-2 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC021593, BC105992, BI160076, CF122406
    UniProtKB/Swiss-Prot
    O43760
    Related
    ENSP00000466204.1, ENST00000589168.1
    Conserved Domains (1) summary
    pfam01284
    Location:2095
    MARVEL; Membrane-associating domain
  2. NM_001363778.1NP_001350707.1  synaptogyrin-2 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC021593, BC105992
    Consensus CDS
    CCDS86641.1
    Related
    ENSP00000467600.1, ENST00000588282.5
    Conserved Domains (1) summary
    pfam01284
    Location:20161
    MARVEL; Membrane-associating domain
  3. NM_004710.7NP_004701.1  synaptogyrin-2 isoform 1

    See identical proteins and their annotated locations for NP_004701.1

    Status: REVIEWED

    Source sequence(s)
    AC021593
    Consensus CDS
    CCDS11753.1
    UniProtKB/Swiss-Prot
    O43760
    UniProtKB/TrEMBL
    A0A024R8T9
    Related
    ENSP00000225777.2, ENST00000225777.7
    Conserved Domains (1) summary
    pfam01284
    Location:20165
    MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    78168545..78172964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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