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BTF3L4 basic transcription factor 3 like 4 [ Homo sapiens (human) ]

Gene ID: 91408, updated on 21-Dec-2019

Summary

Official Symbol
BTF3L4provided by HGNC
Official Full Name
basic transcription factor 3 like 4provided by HGNC
Primary source
HGNC:HGNC:30547
See related
Ensembl:ENSG00000134717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 12.4), adrenal (RPKM 12.1) and 25 other tissues See more
Orthologs

Genomic context

See BTF3L4 in Genome Data Viewer
Location:
1p32.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (52056185..52090716)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (52521857..52556388)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene thioredoxin domain containing 12 Neighboring gene TXNDC12 antisense RNA 1 Neighboring gene KTI12 chromatin associated homolog Neighboring gene uncharacterized LOC107984956 Neighboring gene RNA, 7SL, cytoplasmic 788, pseudogene Neighboring gene zinc finger FYVE-type containing 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC23908, MGC88389

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
transcription factor BTF3 homolog 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136497.2NP_001129969.1  transcription factor BTF3 homolog 4 isoform 2

    See identical proteins and their annotated locations for NP_001129969.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks the exon containing the translation start codon compared to variant (1). The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AK027582, AL139156, BU567198
    Consensus CDS
    CCDS44146.1
    UniProtKB/Swiss-Prot
    Q96K17
    Related
    ENSP00000436712.1, ENST00000472944.6
    Conserved Domains (1) summary
    pfam01849
    Location:132
    NAC; NAC domain
  2. NM_001243767.1NP_001230696.1  transcription factor BTF3 homolog 4 isoform 3

    See identical proteins and their annotated locations for NP_001230696.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon in the coding region, which results in a frameshift, compared to variant 1. The encoded isoform (3) is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AL139156, BU567198, DA369498
    Consensus CDS
    CCDS58001.1
    UniProtKB/Swiss-Prot
    Q96K17
    Related
    ENSP00000434824.1, ENST00000489308.6
  3. NM_152265.5NP_689478.1  transcription factor BTF3 homolog 4 isoform 1

    See identical proteins and their annotated locations for NP_689478.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AL139156, BC070378
    Consensus CDS
    CCDS30713.1
    UniProtKB/Swiss-Prot
    Q96K17
    Related
    ENSP00000360664.4, ENST00000313334.13
    Conserved Domains (1) summary
    pfam01849
    Location:3890
    NAC; NAC domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    52056185..52090716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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