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ZNF479 zinc finger protein 479 [ Homo sapiens (human) ]

Gene ID: 90827, updated on 25-Oct-2019

Summary

Official Symbol
ZNF479provided by HGNC
Official Full Name
zinc finger protein 479provided by HGNC
Primary source
HGNC:HGNC:23258
See related
Ensembl:ENSG00000185177 MIM:617444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KR19; HKr19
Expression
Restricted expression toward testis (RPKM 1.5) See more
Orthologs

Genomic context

See ZNF479 in Genome Data Viewer
Location:
7p11.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (57119574..57139899, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (57187321..57207571, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene septin 7 pseudogene Neighboring gene gem-associated protein 7-like Neighboring gene uncharacterized LOC105375296 Neighboring gene glycerophosphocholine phosphodiesterase 1 pseudogene Neighboring gene vomeronasal 1 receptor 27 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from BioSystems

  • Gene Expression, organism-specific biosystem (from REACTOME)
    Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
  • Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
    Generic Transcription Pathway, organism-specific biosystemOVERVIEW OF TRANSCRIPTION REGULATION: Detailed studies of gene transcription regulation in a wide variety of eukaryotic systems has revealed the general principles and mechanisms by which cell- or t...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger protein 479
Names
KRAB zinc finger protein KR19
zinc finger protein Kr19

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370129.1NP_001357058.1  zinc finger protein 479

    Status: VALIDATED

    Source sequence(s)
    AC099654, AF277624
    Related
    ENSP00000324518.6, ENST00000319636.9
    Conserved Domains (4) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:170372
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:243263
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:480503
    zf-H2C2_2; Zinc-finger double domain
  2. NM_033273.2NP_150376.1  zinc finger protein 479

    See identical proteins and their annotated locations for NP_150376.1

    Status: VALIDATED

    Source sequence(s)
    AC099654, AF277624
    Consensus CDS
    CCDS43590.1
    UniProtKB/Swiss-Prot
    Q96JC4
    Related
    ENSP00000333776.4, ENST00000331162.8
    Conserved Domains (4) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:170372
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:243263
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:480503
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    57119574..57139899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017012778.1XP_016868267.1  zinc finger protein 479 isoform X3

    Conserved Domains (4) summary
    smart00349
    Location:132
    KRAB; krueppel associated box
    COG5048
    Location:126328
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:199219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:211236
    zf-H2C2_2; Zinc-finger double domain
  2. XM_011515608.3XP_011513910.1  zinc finger protein 479 isoform X1

    See identical proteins and their annotated locations for XP_011513910.1

    UniProtKB/Swiss-Prot
    Q96JC4
    Conserved Domains (4) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:170372
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:243263
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:480503
    zf-H2C2_2; Zinc-finger double domain
  3. XM_011515611.2XP_011513913.1  zinc finger protein 479 isoform X3

    See identical proteins and their annotated locations for XP_011513913.1

    Conserved Domains (4) summary
    smart00349
    Location:132
    KRAB; krueppel associated box
    COG5048
    Location:126328
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:199219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:211236
    zf-H2C2_2; Zinc-finger double domain
  4. XM_011515604.3XP_011513906.1  zinc finger protein 479 isoform X1

    See identical proteins and their annotated locations for XP_011513906.1

    UniProtKB/Swiss-Prot
    Q96JC4
    Conserved Domains (4) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:170372
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:243263
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:480503
    zf-H2C2_2; Zinc-finger double domain
  5. XM_011515610.2XP_011513912.1  zinc finger protein 479 isoform X3

    See identical proteins and their annotated locations for XP_011513912.1

    Conserved Domains (4) summary
    smart00349
    Location:132
    KRAB; krueppel associated box
    COG5048
    Location:126328
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:199219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:211236
    zf-H2C2_2; Zinc-finger double domain
  6. XM_011515609.2XP_011513911.1  zinc finger protein 479 isoform X2

    Conserved Domains (5) summary
    smart00349
    Location:666
    KRAB; krueppel associated box
    COG5048
    Location:160362
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:233253
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:645
    KRAB; KRAB box
    pfam13465
    Location:245270
    zf-H2C2_2; Zinc-finger double domain
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