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ZNF479 zinc finger protein 479 [ Homo sapiens (human) ]

Gene ID: 90827, updated on 26-Oct-2022

Summary

Official Symbol
ZNF479provided by HGNC
Official Full Name
zinc finger protein 479provided by HGNC
Primary source
HGNC:HGNC:23258
See related
Ensembl:ENSG00000185177 MIM:617444; AllianceGenome:HGNC:23258
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KR19; HKr19
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 1.5) See more
Orthologs
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Genomic context

See ZNF479 in Genome Data Viewer
Location:
7p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (57117676..57139864, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (57360976..57383153, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (57185383..57207571, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene septin 7 pseudogene 15 Neighboring gene gem-associated protein 7-like Neighboring gene glycerophosphocholine phosphodiesterase 1 pseudogene Neighboring gene vomeronasal 1 receptor 27 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger protein 479
Names
KRAB zinc finger protein KR19
zinc finger protein Kr19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370129.2NP_001357058.1  zinc finger protein 479

    Status: VALIDATED

    Source sequence(s)
    AC099654, AC122133, AC125231
    Consensus CDS
    CCDS43590.1
    UniProtKB/Swiss-Prot
    Q96JC4
    Related
    ENSP00000324518.6, ENST00000319636.10
    Conserved Domains (4) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:170372
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:243263
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:480503
    zf-H2C2_2; Zinc-finger double domain
  2. NM_033273.3NP_150376.1  zinc finger protein 479

    See identical proteins and their annotated locations for NP_150376.1

    Status: VALIDATED

    Source sequence(s)
    AC099654, AC122133, AC125231
    Consensus CDS
    CCDS43590.1
    UniProtKB/Swiss-Prot
    Q96JC4
    Related
    ENSP00000333776.4, ENST00000331162.8
    Conserved Domains (4) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:170372
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:243263
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:480503
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    57117676..57139864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011515604.4XP_011513906.2  zinc finger protein 479 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    57360976..57383153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)