Format

Send to:

Choose Destination

LINC00473 long intergenic non-protein coding RNA 473 [ Homo sapiens (human) ]

Gene ID: 90632, updated on 11-Jun-2021

Summary

Official Symbol
LINC00473provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 473provided by HGNC
Primary source
HGNC:HGNC:21160
See related
Ensembl:ENSG00000112541
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LNC473; C6orf176; bA142J11.1
Expression
Biased expression in adrenal (RPKM 2.4), ovary (RPKM 1.0) and 10 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00473 in Genome Data Viewer
Location:
6q27
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (165924048..165988039, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (166337536..166401527, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 10A Neighboring gene RNA, U6 small nuclear 730, pseudogene Neighboring gene uncharacterized LOC105378114 Neighboring gene LINC00602-GAPDHP72 intergenic CAGE-defined low expression enhancer Neighboring gene long intergenic non-protein coding RNA 602 Neighboring gene uncharacterized LOC105378117

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026860.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK289375, AL132661, BC008632
    Related
    ENST00000455853.1
  2. NR_026861.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate exon in the 3' end, compared to variant 1.
    Source sequence(s)
    AL132661, AL590482, CB270066, DA416538

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    165924048..165988039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center