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Pmar_PMAR006812 tropomyosin 1, isoforms 33/34, putative [ Perkinsus marinus ATCC 50983 ]

Gene ID: 9058583, updated on 28-Dec-2023

Summary

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Gene symbol
Pmar_PMAR006812
Gene description
tropomyosin 1, isoforms 33/34, putative
Locus tag
Pmar_PMAR006812
See related
VectorBase:PMAR006812
Gene type
protein coding
RNA name
tropomyosin 1, isoforms 33/34, putative
RefSeq status
PROVISIONAL
Organism
Perkinsus marinus ATCC 50983 (strain: ATCC 50983, culture-collection: ATCC:50983)
Lineage
Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus
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Genomic context

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Exon count:
16

NW_003216689.1Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S12, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003216689.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
tropomyosin 1, isoforms 33/34, putative
XP_002788123.1
  • encoded by transcript Pmar_PMAR006812-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

mRNA and Protein(s)

  1. XM_002788077.1 → XP_002788123.1  tropomyosin 1, isoforms 33/34, putative [Perkinsus marinus ATCC 50983]

    See identical proteins and their annotated locations for XP_002788123.1

    UniProtKB/TrEMBL
    C5K6J9
    Conserved Domains (3) summary
    COG5665
    Location:12 → 536
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 227
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:409 → 536
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
Nucleotide Protein
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Molecular Biology Databases