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TMEM41A transmembrane protein 41A [ Homo sapiens (human) ]

Gene ID: 90407, updated on 6-Nov-2022

Summary

Official Symbol
TMEM41Aprovided by HGNC
Official Full Name
transmembrane protein 41Aprovided by HGNC
Primary source
HGNC:HGNC:30544
See related
Ensembl:ENSG00000163900 AllianceGenome:HGNC:30544
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
2900010K02Rik
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in small intestine (RPKM 11.1), duodenum (RPKM 11.1) and 25 other tissues See more
Orthologs
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Genomic context

See TMEM41A in Genome Data Viewer
Location:
3q27.2
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (185489601..185499035, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (188305359..188314797, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (185207389..185216823, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 13 Neighboring gene uncharacterized LOC124906312 Neighboring gene uncharacterized LOC101929018 Neighboring gene uncharacterized LOC105374254 Neighboring gene lipase H

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC15397, DKFZp686N107, DKFZp686N06149

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080652.4NP_542383.1  transmembrane protein 41A precursor

    See identical proteins and their annotated locations for NP_542383.1

    Status: VALIDATED

    Source sequence(s)
    AC099661, AL832782, BC019884, BP274550
    Consensus CDS
    CCDS3271.1
    UniProtKB/Swiss-Prot
    Q6ZMJ0, Q96HV5
    Related
    ENSP00000406885.1, ENST00000421852.6
    Conserved Domains (1) summary
    pfam09335
    Location:85205
    VTT; VMP1, TMEM41, and TVP38 (VTT) domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    185489601..185499035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017007437.2XP_016862926.1  transmembrane protein 41A isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    188305359..188314797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)