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CCDC97 coiled-coil domain containing 97 [ Homo sapiens (human) ]

Gene ID: 90324, updated on 23-Nov-2021

Summary

Official Symbol
CCDC97provided by HGNC
Official Full Name
coiled-coil domain containing 97provided by HGNC
Primary source
HGNC:HGNC:28289
See related
Ensembl:ENSG00000142039
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 8.9), ovary (RPKM 6.9) and 25 other tissues See more
Orthologs
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Genomic context

See CCDC97 in Genome Data Viewer
Location:
19q13.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (41309855..41324873)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (41816077..41830778)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene AXL receptor tyrosine kinase Neighboring gene tRNA-Lys (anticodon TTT) 10-1 Neighboring gene heterogeneous nuclear ribonucleoprotein U like 1 Neighboring gene RNA, 7SL, cytoplasmic 34, pseudogene Neighboring gene uncharacterized LOC105372401 Neighboring gene transforming growth factor beta 1 Neighboring gene B9 domain containing 2 Neighboring gene transmembrane protein 91

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40267, MGC20255

General protein information

Preferred Names
coiled-coil domain-containing protein 97

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346100.2NP_001333029.1  coiled-coil domain-containing protein 97 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC011462
    Conserved Domains (1) summary
    pfam09747
    Location:94256
    DUF2052; Coiled-coil domain containing protein (DUF2052)
  2. NM_052848.3NP_443080.1  coiled-coil domain-containing protein 97 isoform 1

    See identical proteins and their annotated locations for NP_443080.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    BC011577, DR001364
    Consensus CDS
    CCDS12578.1
    UniProtKB/Swiss-Prot
    Q96F63
    Related
    ENSP00000269967.2, ENST00000269967.4
    Conserved Domains (1) summary
    pfam09747
    Location:159321
    DUF2052; Coiled-coil domain containing protein (DUF2052)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    41309855..41324873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017027442.1XP_016882931.1  coiled-coil domain-containing protein 97 isoform X1

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